第一作者或通讯作者教学论文（通讯作者论文加*）
1. 司伟*，工科专业课教学中“课程思政”与启发式教学的有机融合. 教书育人(高教论坛) 2021, 110-112.
2. 司伟*，工科专业课程中教师思政教学的意识培养与能力提升. 教书育人(高教论坛) 2021, No.760, 45-47.
3. 司伟*，机械设计课堂中的启发式引导教学. 面向一流课程建设的机械原理课程内涵发展与质量提升 2021, 204-206.
第一作者或通讯作者SCI论文（通讯作者论文加*）
1. Hu, R.; Zhang, Z.; Tian, L.; Wei, G.; Wang, Z.; Wanunu, M.; Si, W.*; Zhao, Q. Quad-Nanopore Array Enables High-Resolution Identification of Four Single-Stranded DNA Homopolymers. ACS Nano 2025, 19, 11403-11411.
2. Zhang, Z.; Wu, G.; Wang, K.; Si, W.* Slowing Down Peptide Translocation through MoSi2N4 Nanopores for Protein Sequencing. J. Phys. Chem. B 2025, 129, 2471-2481.
3. Si, W.*; Chen, H.; Lin, X.; Wu, G.; Zhao, J.; Sha, J. Actuation mechanism of a nanoscale drilling rig based on nested carbon nanotubes. Nanoscale 2024, 16, 10414-10427.
4. Si, W.*; Chen, J.; Zhang, Z.; Wu, G.; Zhao, J.; Sha, J. Electroosmotic Sensing of Uncharged Peptides and Differentiating Their Phosphorylated States Using Nanopores. Chemphyschem 2024, 25, e202400281.
5. Lin, X.; Chen, H.; Wu, G.; Zhao, J.; Zhang, Y.; Sha, J.; Si, W.* Selective Capture and Manipulation of DNA through Double Charged Nanopores. J. Phys. Chem. Lett. 2024, 15, 5120-5129.
6. Zhang, Z.; Wang, L.; Si, W.* Electroosmotic Flow-Driven DNA-CNT Nanomotor via Tunable Surface-Charged Nanopore Array. J. Phys. Chem. Lett. 2024, 15, 10950-10957.
7. Zhang, Z.; Wu, G. S.; Zhang, Y.; Sha, J. J.; Si, W.* Amino Acid Sorting Based on Bifurcated Nanochannels with Tunable Surface Charge. Adv. Theory Simul. 2024, 7, 2301251.
8. Si, W.*; Zhang, Z.; Chen, J.; Wu, G.; Zhang, Y.; Sha, J., Protein Deceleration and Sequencing Using Si(3)N(4)-CNT Hybrid Nanopores. Chemphyschem 2024, 25 (7), e202300866.
9. Yuan, R.; Zhang, Z.; Wu, G.; Zhang, Y.; Sha, J.; Chen, Y.; Si, W.*, Unfolding of protein using MoS(2)/SnS(2)heterostructure for nanopore-based sequencing. Nanotechnology 2024, 35 (13), 135501.
10. Si, W.*; Wang, L.; Lin, X.; Wu, G.; Zhang, Y.; Sha, J. A controllable nanoscale telescopic arm designed by encoding the nested multi-walled carbon nanotubes. Phys. Chem. Chem. Phys. 2023, 25, 11805-11815.
11. Ma, C.; Xu, W.; Liu, W.; Xu, C.; Si, W.*; Sha, J. Precise control of CNT-DNA assembled nanomotor using oppositely charged dual nanopores. Nanoscale 2023, 15, 11052-11063.
12. Si, W.*; Lin, X.; Wang, L.; Wu, G.; Zhang, Y.; Chen, Y.; Sha, J. Nanopore actuation of a DNA-tracked nanovehicle. Nanoscale 2023, 15, 14659-14668.
13. Si, W.*; Zhu, Z.; Wu, G.; Zhang, Y.; Chen, Y.; Sha, J. Encoding Manipulation of DNA‐Nanoparticle Assembled Nanorobot Using Independently Charged Array Nanopores. Small Methods 2022, 6(8): e2200318.
14. Si, W.*; Yuan, R.; Wu, G.; Kan, Y.; Sha, J.; Chen, Y.; Zhang, Y.; Shen, Y. Navigated Delivery of Peptide to the Nanopore Using In-Plane Heterostructures of MoS2 and SnS2 for Protein Sequencing. J. Phys. Chem. Lett. 2022, 3863-3872.
15. Yu, M. #; Si, W. *#（#并列一作）; Zeng, T. #; Chen, C.; Lin, X.; Ji, Z.; Guo, F.; Li, Y.; Sha, J.; Dong, Y. Unveiling the Microscopic Mechanism of Current Variation in the Sensing Region of the MspA Nanopore for DNA Sequencing. J. Phys. Chem. Lett. 2021, 12(37): 9132-9141.
16. Si, W.*; Yang, H.; Wu, G.; Zhang, Y.; Sha, J. Velocity control of protein translocation through a nanopore by tuning the fraction of benzenoid residues. Nanoscale 2021, 13(36): 15352-15361.
17. Si, W.*; Chen, C.; Wu, G.; Sun, Q.; Yu, M.; Qiao, Y.; Sha, J. High Efficient Seawater Desalination Based on Parallel Nanopore Systems. Nano 2021, 16, 2150077.
18. Si, W.*;Yu, M.; Wu, G.; Chen, C.; Sha, J.; Zhang, Y.; Chen, Y., A Nanoparticle-DNA Assembled Nanorobot Powered by Charge-Tunable Quad-Nanopore System. ACS Nano 2020, 14 (11), 15349-15360.
19. Si, W.*; Sun, Q.; Chen, C.; Yu, M.; Sha, J.; Zhang, Y.; Kan, Y.; Chen, Y., Detergent-Assisted Braking of Peptide Translocation through a Single-Layer Molybdenum Disulfide Nanopore. Small Methods 2020, 1900822.(封面论文)
20. Si, W.*; Yang, H.; Wu, G.; Chen, C.; Yu, M., Manipulation of DNA transport through solid-state nanopores by atomic force microscopy. Materials Research Express 2020,7 (9), 095404.
21. Liu, C. #; Si, W. #（#并列一作）; Wu, C.#; Yang, J.; Chen, Y.; Dames, C., The ignored effects of vibrational entropy and electrocaloric effect in PbTiO3 and PbZr0.5Ti0.5O3 as studied through first-principles calculation. Acta Materialia 2020,191, 221-229.
22. Si, W.; Sha, J.; Sun, Q.; He, Z.; Wu, L.; Chen, C.; Yu, S.-H.; Chen, Y., Shape Characterization and Discrimination of Single Nanoparticles using Solid-state Nanopores. Analyst 2020,145 (5), 1657-1666. (封面论文)
23. Si, W.*; Liu, C.; Sha, J.; Zhang, Y.; Chen, Y., Computational modeling of ionic currents through difform graphene nanopores with consistent cross-sectional areas. Phys. Chem. Chem. Phys. 2019,21 (47), 26166-26174.
24. Si, W. *; Zhang, Y.; Wu, G.; Kan, Y.; Zhang, Y.; Sha, J.; Chen, Y., Discrimination of Protein Amino Acid or Its Protonated State at Single-Residue Resolution by Graphene Nanopores. Small 2019,15 (14), e1900036.
25. Si, W.; Yang, H.; Sha, J.; Zhang, Y.; Chen, Y., Discrimination of single-stranded DNA homopolymers by sieving out G-quadruplex using tiny solid-state nanopores. Electrophoresis 2019,40 (16-17), 2117-2124.(封面论文)
26. Si, W. *; Zhang, Y.; Sha, J. J.; Chen, Y. F., Mechanisms of pressure-induced water infiltration process through graphene nanopores. Mol Simulat 2019,45 (6), 518-524.
27. Si, W.*; Zhang, Y.; Sha, J.; Chen, Y., Controllable and reversible DNA translocation through a single-layer molybdenum disulfide nanopore. Nanoscale 2018,10 (41), 19450-19458.
28. Sha, J.#; Si, W.#（#并列一作）; Xu, B.; Zhang, S.; Li, K.; Lin, K.; Shi, H.; Chen, Y., Identification of Spherical and Nonspherical Proteins by a Solid-State Nanopore. Anal. Chem. 2018,90 (23), 13826-13831.
29. Si, W.; Yang, H. J.; Li, K.; Wu, G. S.; Zhang, Y.; Kan, Y. J.; Xie, X.; Sha, J. J.; Liu, L.; Chen, Y. F., Investigation on the interaction length and access resistance of a nanopore with an atomic force microscopy. Science China-Technological Sciences 2017,60 (4), 552-560.
30. Si, W.; Aksimentiev, A., Nanopore Sensing of Protein Folding. ACS Nano 2017,11 (7), 7091-7100.
31. Si, W.; Aksimentiev, A., Nanopore Ionic Current can Report on the Folding State of a Protein. Biophys. J. 2017,112 (3), 195a-195a.
32. Cressiot, B.#; Greive, S. J.#; Si, W#.（#并列一作）; Pascoa, T. C.; Mojtabavi, M.; Chechik, M.; Jenkins, H. T.; Lu, X.; Zhang, K.; Aksimentiev, A.; Antson, A. A.; Wanunu, M., Porphyrin-Assisted Docking of a Thermophage Portal Protein into Lipid Bilayers: Nanopore Engineering and Characterization. ACS Nano 2017,11 (12), 11931-11945.
33. Si, W.; Zhang, Y.; Wu, G. S.; Sha, J. J.; Liu, L.; Chen, Y. F., DNA sequencing technology based on nanopore sensors by theoretical calculations and simulations. Chinese Science Bulletin 2014,59 (35), 4929-4941.
34. Si, W.; Sha, J. J.; Liu, L.; Qiu, Y. H.; Chen, Y. F., Effect of nanopore size on poly(dT)(30) translocation through silicon nitride membrane. Sci. China: Technol. Sci. 2013,56 (10), 2398-2402.
其他SCI论文
35. Lv, H.; Si, W.; Sha, J.; Chen, Y.; Zhang, Y. Strategies for high performance characterization of nanomaterials using in situ liquid cell transmission electron microscopy. Next Nanotechnology 2025, 7, 100115.
36. Zhang, Y.; Lian, X.; Si, W.; Sha, J.; Chen, Y. The origin of the voltage dependence of conductance blockades from DNA translocation through solid-state nanopores. Materials Chemistry Frontiers 2023, 7, 4564-4572.
37. Sarthak, K.; Si, W.; Wilson, J.; Aksimentiev, A. Single-molecule identification of folded proteins from nanopore ionic current signatures. Biophys. J. 2023, 122, 156a-157a.
38. Zhang, Z.; Chen, M.; Zhan, L.; Zheng, F.; Si, W.; Sha, J.; Chen, Y. Length-Dependent Collective Vibrational Dynamics in Alpha-Helices. Chemphyschem 2022, 23, e202200082.
39. Zhan, L.; Zhang, Y.; Si, W.; Sha, J.; Chen, Y. Detection and Separation of Single-Stranded DNA Fragments Using Solid-State Nanopores. J. Phys. Chem. Lett. 2021, 12, 6469-6477.
40. Zhang, Y.; Zhao, J.; Si, W.; Kan, Y.; Xu, Z.; Sha, J.; Chen, Y. Electroosmotic Facilitated Protein Capture and Transport through Solid‐State Nanopores with Diameter Larger than Length. Small Methods 2020, 4, 1900893.
41. Zhang, Y.; Zhao, J.; Kan, Y.; Ji, R.; Pan, J.; Huang, W.; Xu, Z.; Si, W.; Sha, J. Concentration effects on capture rate and translocation configuration of nanopore-based DNA detection. Electrophoresis 2020, 41, 1523-1528.
42. Wilson, J.; Sarthak, K.; Si, W.; Gao, L.; Aksimentiev, A. Rapid and Accurate Determination of Nanopore Ionic Current Using a Steric Exclusion Model. ACS Sens 2019, 4, 634-644.
43. Ma, J.; Li, K.; Li, Z.; Qiu, Y.; Si, W.; Ge, Y.; Sha, J.; Liu, L.; Xie, X.; Yi, H.; Ni, Z.; Li, D.; Chen, Y. Drastically Reduced Ion Mobility in a Nanopore Due to Enhanced Pairing and Collisions between Dehydrated Ions. J. Am. Chem. Soc. 2019, 141, 4264-4272.
44. Yang, H.; Li, Z.; Si, W.; Lin, K.; Ma, J.; Li, K.; Sun, L.; Sha, J.; Chen, Y. Identification of Single Nucleotides by a Tiny Charged Solid-State Nanopore. J. Phys. Chem. B 2018, 122, 7929–7935.
45. Winogradoff, D.; Maffeo, C.; Si, W.; Aksimentiev, A. All-Atom Structure and Ionic Conductivity of the Nuclear Pore Complex. Biophys. J. 2018, 114, 630a-630a.
46. Shi, X.; Li, Q.; Gao, R.; Si, W.; Liu, S. C.; Aksimentiev, A.; Long, Y. T. Dynamics of a Molecular Plug Docked onto a Solid-State Nanopore. J. Phys. Chem. Lett. 2018, 9, 4686-4694.
47. Zhang, Y.; Wu, G.; Si, W.; Ma, J.; Yuan, Z.; Xie, X.; Liu, L.; Sha, J.; Li, D.; Chen, Y. Ionic current modulation from DNA translocation through nanopores under high ionic strength and concentration gradients. Nanoscale 2017, 9, 930-939.
48. Yang, H. J.; Li, Z. W.; Chen, Y. F.; Si, W. Identification of Single Nucleotides in SiN Nanopore. Biophys. J. 2017, 112, 25a-25a.
49. Wolfe, A. J.; Si, W.; Zhang, Z.; Blanden, A. R.; Hsueh, Y. C.; Gugel, J. F.; Pham, B.; Chen, M.; Loh, S. N.; Rozovsky, S.; Aksimentiev, A.; Movileanu, L. Quantification of Membrane Protein-Detergent Complex Interactions. J. Phys. Chem. B 2017, 121, 10228-10241.
50. Shi, X.; Gao, R.; Ying, Y. L.; Si, W.; Chen, Y. F.; Long, Y. T. A Scattering Nanopore for Single Nanoentity Sensing. Acs Sensors 2016, 1, 1086-1090.
51. Cao, Y.; Lin, Y.; Qian, R. C.; Ying, Y. L.; Si, W.; Sha, J.; Chen, Y.; Long, Y. T. Evidence of single-nanoparticle translocation through a solid-state nanopore by plasmon resonance energy transfer. Chem. Commun. (Camb.) 2016, 52, 5230-3.
52. Shi, X.; Gao, R.; Ying, Y. L.; Si, W.; Chen, Y.; Long, Y. T. An integrated system for optical and electrical detection of single molecules/particles inside a solid-state nanopore. Faraday Discuss. 2015, 184, 85-99.
53. Sha, J. J.; Si, W.; Xu, W.; Zou, Y. R.; Chen, Y. F. Glass capillary nanopore for single molecule detection. Science China-Technological Sciences 2015, 58, 803-812.
54. Qiu, Y. H.; Li, K.; Chen, W. Y.; Si, W.; Tan, Q. Y.; Chen, Y. F. Ion and water transport in charge-modified graphene nanopores. Chinese Physics B 2015, 24, 108201.
55. Kan, Y.; Tan, Q.; Wu, G.; Si, W.; Chen, Y. Study of DNA adsorption on mica surfaces using a surface force apparatus. Sci. Rep. 2015, 5, 8442.
56. Zhang, Y.; Wu, G. S.; Si, W.; Sha, J. J.; Liu, L.; Chen, Y. F. Retarding and manipulating of DNA molecules translocation through nanopores. Chin. Sci. Bull. 2014, 59, 4908-4917.
57. Zhang, Y.; Wu, G.; Ma, J.; Yuan, Z.; Si, W.; Liu, L.; Sha, J.; Chen, Y. Temperature effect on translocation speed and capture rate of nanopore-based DNA detection. Sci China Technol Sc 2014, 58, 519-525.
58. Wu, G. S.; Zhang, Y.; Si, W.; Sha, J. J.; Liu, L.; Chen, Y. F. Integrated solid-state nanopore devices for third generation DNA sequencing. Science China-Technological Sciences 2014, 57, 1925-1935.
59. Qiu, Y. H.; Tan, Q. Y.; Si, W.; Chen, Y. F. Ion specificity in NaCl solution confined in silicon nanochannels. Science China-Technological Sciences 2014, 57, 230-238.